Illumina plug-in installer script fails (in some cases)

[Jari Häkkinen]

The plug-in installer fails when I try to rerun it with the below stack trace. I have set the error option to 'skip' for already existing items.

net.sf.basedb.core.ItemAlreadyExistsException: Item already exists: nullBGX file has invalid jar path.
This datafiletype can not be used.
at net.sf.basedb.illumina.install.Install.createDataFileType(Install.java:780)
at net.sf.basedb.illumina.install.Install.installIlluminaItems(Install.java:469)
at net.sf.basedb.illumina.install.Install.run(Install.java:266)
at net.sf.basedb.core.PluginExecutionRequest.invoke(PluginExecutionRequest.java:108)
at net.sf.basedb.core.InternalJobQueue$JobRunner.run(InternalJobQueue.java:487)
at java.lang.Thread.run(Thread.java:619)

[Jari Häkkinen]

I should maybe mention that on my 2.7.0pre I have no problems but on a 2.6.2 I get the stacktrace.

[Martin Svensson]

In some way the jar path of the validator and the meta-data reader is different compare to the jar path used by the installation plug-in.
The message is a bit cryptic and should be changed.
Perhaps a 'use'-option should be added to alternatives of how existing items should be handled?

[Martin Svensson]

(In [732]) References #112 Changed the exception message.

[Martin Svensson]

(In [736]) Fixes #112. Changed the property validation when installing a data file-type which already exists.