id,summary,reporter,owner,description,type,status,priority,milestone,component,resolution,keywords,cc 1051,The Release exporter plug-in should assist when creating zip files with expression data,Nicklas Nordborg,Nicklas Nordborg,"Some of the data files that belong to Cufflinks and !StringTie raw bioassays need to be packaged as zip files for releasing to external partners. The !ReleaseArchive is not suitable since it contains other files and it is difficult to select the exact files that are needed: * Cufflinks - genes.fpkm_tracking - isoforms.fpkm_tracking - skipped.gtf - transcripts.gtf * !StringTie - e2t.ctab - e_data.ctab - gene.tsv - i2t.ctab - i_data.ctab - t_data.ctab - transcript.gtf - transcript_covered.gtf A simple solution is to create ""list"" files that list all files that are part of the data set. For example, `cufflinks.lst`: {{{ ./S000084/l.r.m.c.lib.g/k.a/t/genes.fpkm_tracking ./S000084/l.r.m.c.lib.g/k.a/t/isoforms.fpkm_tracking ./S000084/l.r.m.c.lib.g/k.a/t/skipped.gtf ./S000084/l.r.m.c.lib.g/k.a/t/transcripts.gtf ... }}} The `zip` command can then be used to create `cufflinks.zip` with all Cufflinks data: {{{ zip -@ cufflinks.zip < cufflinks.lst }}} ",enhancement,closed,major,Reggie v4.18,net.sf.basedb.reggie,fixed,,