Opened 3 years ago

Closed 3 years ago

#1047 closed enhancement (fixed)

HaplotypeCaller should be wrapped with stdwrap.sh

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: minor Milestone: Reggie v4.18
Component: net.sf.basedb.reggie Keywords:
Cc:

Description

Most of the log information that is produced by HaplotypeCaller is written to stderr. It also write some information to stdout but it is not any interesting stuff. This means that the log is lost in case the program i successful (which is is most of the time). If we want to keep everything we should use the stdwrap.sh script as a wrapper (as we already do for some other programs).

Change History (2)

comment:1 Changed 3 years ago by Nicklas Nordborg

Milestone: Reggie v4.17Reggie v4.18

Ticket retargeted after milestone closed

comment:2 Changed 3 years ago by Nicklas Nordborg

Resolution: fixed
Status: newclosed

(In [4803]) Fixes #1047: HaplotypeCaller? should be wrapped with stdwrap.sh

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