Opened 3 weeks ago

Last modified 3 weeks ago

#1028 new enhancement

Add support for StringTie data

Reported by: nicklas Owned by:
Priority: major Milestone: Relax v1.2
Component: net.sf.basedb.relax Keywords:

Description (last modified by nicklas)

The relax server is currently only supporting "cufflinks" raw bioassays. We need to define the "stringtie" type in the same way as we do on the production server.

Once the raw data type has been defined, the release importer should probably work without (or with only minor) modifications.

The level 3 exporter plug-in currently has a section for handling Cufflinks and FPKM files. This need to the modified to support StringTie as well (and whatever file(s) we decide publish).

Change History (1)

comment:1 Changed 3 weeks ago by nicklas

  • Description modified (diff)
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