id,summary,reporter,owner,description,type,status,priority,milestone,component,resolution,keywords,cc 1017,Remove code for handling optional MaskedSequences,Nicklas Nordborg,Nicklas Nordborg,"When the masking step has been introduced to the Hisat pipeline again (see #1015), all places in the code that works with !MaskedSequences can be simplified since we no longer need to consider two different cases. The ""Delete unmasked Hisat alignments"" wizard can also be removed.",enhancement,closed,major,Reggie v4.16,net.sf.basedb.reggie,fixed,,