Opened 7 months ago

Closed 6 months ago

#1017 closed enhancement (fixed)

Remove code for handling optional MaskedSequences

Reported by: nicklas Owned by: nicklas
Priority: major Milestone: Reggie v4.16
Component: net.sf.basedb.reggie Keywords:
Cc:

Description (last modified by nicklas)

When the masking step has been introduced to the Hisat pipeline again (see #1015), all places in the code that works with MaskedSequences can be simplified since we no longer need to consider two different cases.

The "Delete unmasked Hisat alignments" wizard can also be removed.

Change History (6)

comment:1 Changed 6 months ago by nicklas

  • Description modified (diff)

comment:2 Changed 6 months ago by nicklas

  • Milestone changed from Reggie v4.x to Reggie v4.16

comment:3 Changed 6 months ago by nicklas

  • Status changed from new to assigned

comment:4 Changed 6 months ago by nicklas

(In [4685]) References #1017: Remove code for handling optional MaskedSequences?

Removed handling of the case where no masked item exists between the aligned and merged sequences.

comment:5 Changed 6 months ago by nicklas

(In [4686]) References #1017: Remove code for handling optional MaskedSequences?

Removed the "Delete unmasked Hisat alignments" wizard.

comment:6 Changed 6 months ago by nicklas

  • Resolution set to fixed
  • Status changed from assigned to closed
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