"rba" // From cohortPatient.txt "Patient" "Gender" // From cohortCase.txt "Case" "Consent" "ConsentDate" // From cohortSpecimen.txt "Specimen" "BiopsyType" "SpecimenType" "linkedSpecimen" "Laterality" "ArrivalDate" "SpecimenCreated" "SamplingDateTime" "RNALaterDateTime" // From cohortStained.txt "StainedSlide" "StainedHis" "StainedHisCreated" "ScoreComplete" "ScoreInvasiveCancer" "ScoreInsituCancer" "ScoreLymphocytes" "ScoreStroma" "ScoreFat" "ScoreNormal" // From cohortLysate.txt "Lysate" "LysateCreated" "ParentQuantityUsed" "MultPieces" "PartitionDate" // From cohortRNA.txt "RNA" "QiacubeDate" "QiacubeRunNo" "NDConc" "ND260by230" "ND260by280" "RNAQC_last" // From cohortLibrary.txt "Library" "Adaptor" "LibraryCreated" "Protocol" "QubitConc" "LibraryBioplate" // From cohortSequencing.txt "Sequencer" "SequencingEndDate" // From cohortMerged.txt "MergedSequences" "MergedFlowCells" "READS" "PF_READS" "ADAPTER_READS" "PT_READS" // From cohortMasked.txt "MaskedSequences" "PM_READS" // From cohortAligned.txt "AlignedSequences" "ALIGNED_PAIRS" "READ_PAIRS_EXAMINED" "READ_PAIR_DUPLICATES" "FRACTION_DUPLICATION" // From cohortRawbioassay.txt "Rawbioassay" "Raw.data.type" "Import.date" "Array.design" // From cohortINCA.txt IncaExportDate +all INCA annotations